ORCID On Google Scholar On ResearchGate

Journal & Book Chap

  1. Podell J, Pergakis M, Yang S, Felix R, Parikh G, Chen H, Chen L, Miller C, Hu P, Badjatia N. Leveraging Continuous Vital Sign Measurements for Real-Time Assessment of Autonomic Nervous System Dysfunction After Brain Injury: A Narrative Review of Current and Future Applications. Neurocritical Care. 2022 Apr 12:1-4. [Link] PDF
  2. Zeineddin, A., Hu, P., Yang, S., Floccare, D., Lin, C.Y., Scalea, T.M. and Kozar, R.A., 2021. Prehospital continuous vital signs predict need for resuscitative endovascular balloon occlusion of the aorta and resuscitative thoracotomy. Journal of Trauma and Acute Care Surgery, 91(5), pp.798-802. Link [PDF]
  3. Yang S, Mackenzie CF, Rock P, Lin C, Floccare D, Scalea T, Stumpf F, Winans C, Galvagno S, Miller C, Stein D. Comparison of massive and emergency transfusion prediction scoring systems after trauma with a new Bleeding Risk Index score applied in-flight. Journal of Trauma and Acute Care Surgery. 2021 Feb 1;90(2):268-73. [Link] PDF
  4. Mackenzie CF, Yang S, Garofalo E, Hu PF, Watts D, Patel R, Puche A, Hagegeorge G, Shalin V, Pugh K, Granite G. Enhanced Training Benefits of Video Recording Surgery With Automated Hand Motion Analysis. World Journal of Surgery. 2021 Apr;45(4):981-7. [Link] [PDF]
  5. Aligholizadeh E, Teeter W, Patel R, Hu P, Fatima S, Yang S, Ramani G, Safadi S, Olivieri P, Scalea T, Murthi S. A novel method of calculating stroke volume using point-of-care echocardiography. Cardiovascular Ultrasound. 2020 Dec;18(1):1-7. [Link] [PDF]
  6. Wasicek, P.J., Yang, S., Teeter, W.A., Hu, P., Stein, D.M., Scalea, T.M. and Brenner, M.L., 2019. Traumatic cardiac arrest and resuscitative endovascular balloon occlusion of the aorta (REBOA): a preliminary analysis utilizing high fidelity invasive blood pressure recording and videography. European Journal of Trauma and Emergency Surgery, 45(6), pp.1097-1105. Link PDF
  7. Mackenzie CF, Shackelford SA, Tisherman SA, Yang S, Puche A, Elster EA, Bowyer MW, Anazodo A, Bonds B, Granite G, Hagegeorge G. Critical errors in infrequently performed trauma procedures after training. Surgery. 2019 Nov 1;166(5):835-43. Link PDF
  8. Wasicek PJ, Teeter WA, Shiming Yang, Hu P, Gamble WB, Galvagno SM, Hoehn MR, Scalea TM, Morrison JJ. Arterial Waveform Morphomics During Hemorrhagic Shock. Eur J Trauma and Emerg Surg. 2019. Link PDF
  9. Crawford AM, Yang S, Hu P, Li Y, Lozanova P, Scalea TM, Stein DM. Concomitant chest trauma and traumatic brain injury, biomarkers correlate with worse outcomes. Journal of trauma and acute care surgery. 2019 Jul 1;87(1S):S146-51. Link PDF
  10. Shiming Yang, Lynn Stansbury, Peter Rock, Thomas Scalea, Peter Hu, Linking Big Data and Prediction Strategies Tools, Pitfalls, and Lessons Learned, Critical Care Medicine, Mar. 2019. Link PDF
  11. Chris Melinosky, Shiming Yang, Peter Hu, HsiaoChi Li, Catriona Miller, Imad Khan, Colin Mackenzie, Wan-Tsu Chang, Gunjan Parikh, Deborah Stein, Neeraj Badjatia, Continuous Vital Sign Analysis to Predict Secondary Neurological Decline after Traumatic Brain Injury, Frontiers in Neurology 9, 761, Link [PDF]
  12. Shiming Yang, Peter Hu, Colin Mackenzie, Chapter 24: Trauma Outcome Prediction in the Era of Big Data: From Data Collection to Analytics, Signal Processing and Machine Learning for Biomedical Big Data, Ed. by Ervin Sejdic, Tiago H. Falk, CRC Press (2018) Link PDF
  13. Philip J Wasicek, Shiming Yang, William A Teeter, Peter Hu, Deborah M Stein, Thomas M Scalea, Megan L Brenner, Traumatic cardiac arrest and resuscitative endovascular balloon occlusion of the aorta (REBOA): a preliminary analysis utilizing high fidelity invasive blood pressure recording, European Journal of Trauma and Emergency Surgery, 1-9, (2018) Link PDF
  14. Philip J Wasicek, William A Teeter, Shiming Yang, Peter Hu, Melanie R Hoehn, Deborah M Stein, Thomas M Scalea, Megan L Brenner, Life over Limb: Lower Extremity Ischemia in the Setting of Resuscitative Endovascular Balloon Occlusion of the Aorta (REBOA), The American Surgeon, 84(6), p971-977, (2018) Link PDF
  15. Nehu Parimi, Magali J Fontaine, Shiming Yang, Peter F Hu, Hsiao-Chi Li, Colin F Mackenzie, Rosemary A Kozar, Catriona Miller, Thomas M Scalea, Deborah M Stein, Blood Transfusion Indicators Following Trauma in the Non-Massively Bleeding Patient, Annals of Clinical & Laboratory Science, 48(3), p279-285, (2018) Link [PDF]
  16. Megan Brenner, William Teeter, Melanie Hoehn, Jason Pasley, Peter Hu, Shiming Yang, Anna Romagnoli, Jose Diaz, Deborah Stein, Thomas Scalea, Use of resuscitative endovascular balloon occlusion of the aorta for proximal aortic control in patients with severe hemorrhage and arrest, JAMA surgery, 153(2), p130-135, (2018) Link PDF
  17. William Teeter, MD, MS, Anna Romagnoli, MD, Philip Wasicek, MD, Peter Hu, PhD, Shiming Yang, PhD, Deborah Stein, MD, MPH, Thomas Scalea, MD, Megan Brenner, MD, MS, Resuscitative Endovascular Balloon Occlusion of the Aorta Improves Cardiac Compression Fraction Versus Resuscitative Thoracotomy in Patients in Traumatic Arrest, Annals of Emergency Medicine, (2018) Link PDF
  18. P.F. Hu, S. Yang, H. Li, L.G. Stansbury, F. Yang, G Hagegeorge, C. Miller, P. Rock, D.M. Stein, C.F. Mackenzie, Reliable Collection of Real-time Patient Physiologic Data from Less Reliable Networks: a “monitor of monitors” system (MoMs). Journal of Medical Systems, (2017)41: 3. doi:10.1007/s10916-016-0648-5. Link PDF
  19. Z.D.W. Dezman, C. Gao, S. Yang, P. Hu, L. Yao, H. Li, C.I. Chang, C.F. Mackenzie, Anomaly Detection Outperforms Logistic Regression in Predicting Outcomes in Trauma Patients, Prehospital Emergency Care, Accepted Sep.20, 2016. Link PDF
  20. M. Bradley, B. Bonds, L. Chang, S. Yang, P.F. Hu, H. Li, M. Brenner, D.M. Stein, T.M. Scalea, Open Chest Cardiac Massage Offers No Benefit Over Closed Chest Compressions in Patients with Traumatic Cardiac Arrest, J. of Trauma, 81(5), p849-54(2016). Link PDF
  21. S. Yang, A. Menne, P.F. Hu, L. Stansbury, C. Gao, N. Dorsey, W. Chiu, S. Shackelford, C.F. Mackenzie, Acoustic Sensor versus Electrocardiographically Derived Respiratory Rate in Unstable Trauma Patients, J. of Clin. Monit. Comput. 2016, accepted on Jun. 3. Link PDF Suppl.
  22. N. Parimi, P.F. Hu, C. Mackenzie, S. Yang, et.al, Automated Continuous Vital Signs Predict Use of Uncrossed Matched Blood (UnXRBC) and Massive Transfusioin (MT) Following Trauma, J. of Trauma, 2016;80(6):897-906. Link Draft
  23. Z.DW. Dezman, E. Hu, P.F. Hu, S. Yang, L.G. Stansbury, R. Fang, C. Miller, C.F. Mackenzie, Computer Modelling Using Prehospital Vitals Predicts Transfusion and Mortality, Prehospital Emergency Care, Accepted Jan. 2016. Link PDF
  24. S. Yang, P.F. Hu, A. Anazodo, C. Gao, H. Chen, C. Wade, L. Hartsky, C. Miller, C. Imle, R. Fang, C.F. Mackenzie, Trends of hemoglobin oximetry: do they help predict blood transfusion during trauma patient resuscitation?, Anesthesia & Analgesia, 2016; 122(1) p115-25. Link PDF Suppl.
  25. B. Bonds, P.F. Hu, Y. Li, S. Yang, K. Colton, A. Gonchigar, J, Cheriyan, T. Grissom, R. Fang, D.M. Stein, Predictive Value of Hyperthermia and Intracranial Hypertension on Neurological Outcomes in Patients with Severe Traumatic Brain Injury, Brain Injury, 2015; 29(13-14):1642-7. DOI: 10.3109/02699052.2015.1075157. Link PDF
  26. S. Shackelford, S. Yang, P.F. Hu, C. Miller, A. Anazodo, S. Galvagno, Y. Wang, L. Hartsky, R. Fang, C. Mackenzie, Predicting Blood Transfusion using Automated Analysis of Pulse Oximetry Signals and Lab Values, J. of Trauma and Acute Care Surgery, 2015; 79(4) p S175-80. Link PDF
  27. B.W. Bonds, S. Yang, P.F. Hu, K. Kalpakis, L.G. Stansbury, T.M. Scalea, D.M. Stein, Predicting Secondary Insults After Severe Traumatic Brain Injury: Predicting Intracranial Pressure After Traumatic Brain Injury, J. of Trauma and Acute Care Surgery, 2015, 79(1). Link PDF
  28. S.M. Galvagno, P.F. Hu, S. Yang, C. Gao, D. Hanna, S. Shackelford, C.F. Mackenzie, Accuracy of Continuous Noninvasive Hemoglobin Monitoring for the Prediction of Blood Transfusions in Trauma Patients, J. Clin. Monit. Comput. 2015; accepted for publication on Feb. 23, 2015. Link PDF
  29. K. Kalpakis, S. Yang, P.F. Hu, C. F. Mackenzie, L. Stansbury, D.M. Stein, T.M. Scalea, Permutation entropy analysis of vital signs data for outcome prediction of patients with severe traumatic brain injury, Computers in Biology and Medicine, 2015; 56:167-74. Link PDF
  30. S. Yang, M. Njoku, C.F. Machenzie, ‘Big data’ approaches to trauma outcome prediction and autonomous resuscitation, British J. of Hospital Medicine, 2014; 75(11):637-41. Link PDF
  31. K. Colton, S. Yang, P.F. Hu, H.H. Chen, B. Bonds, L.G. Stansbury, T.M. Scalea, D.M. Stein, Pharmacologic Treatment Reduces Pressure Times Time Dose and Relative Duration of Intracranial Hypertension, J. of Intensive Care Medicine, 2014, Oct. 15, doi: 10.1177/0885066614555692. Link PDF
  32. K. Colton, S. Yang, P.F. Hu, H.H. Chen, L.G. Stansbury, T.M. Scalea, D.M. Stein, Responsiveness to Therapy for Increased Intracranial Pressure in Traumtic Brain Injury is Associated with Neurological Outcome, Injury, 2014; 45(12):2084-8. Link PDF
  33. K. Colton, S. Yang, P.F. Hu, H.H. Chen, B. Bonds, T.M. Scalea, D.M. Stein, Intracranial pressure response after pharmacologic treatment of intracranial hypertension, J. of Trauma and Acute Care Surgery, 77(1):47-53, Jul 2014. Link Abs PDF
  34. S. Yang, K. Kalpakis, A. Biem, Detecting Road Traffic Events by Coupling Multiple Timeseries with Nonparametric Bayesian Method, IEEE Transactions on Intelligenct Transportation Systems, 2014; 15(5):1936-46. Link PDF
  35. C.J. Diamantidis, W. Fink, S. Yang, M.R. Zuckerman, J. Ginsberg, P.Hu, Y. Xiao, and J.C. Fink, Directed Use of the Internet for Health Information by Patients with Chronic Kidney Disease: Prospective Cohort Study, J. of Medical Internet Research, Vol.15, No. 11, p.e251, 2013. Link
  36. D. M. Stein, M. Brenner, P.F. Hu, S. Yang, E. C. Hall, L. G. Stansbury, J. Menaker, T. M. Scalea, Timing of Intracranial Hypertension Following Severe Traumatic Brain Injury, J. Neurocritical Care, 2013; 18(3):332-40, Springer. Link PDF PDF
  37. D. M. Stein, P. F. Hu, H. Chen, S. Yang, L. G. Stansbury, T.M. Scalea, Computational gene mapping to analyze continuous automated physiologic monitoring data in neuro-trauma intensive care, The Journal of Trauma and Acute Care Surgery, 2012, 73(2):419-25. Link
  38. CJ Diamantidis, M Zuckerman, W Fink, Peter Hu, S. Yang, JC Fink, Usability of a CKD Educational Website Targeted to Patients and Their Family Members, Clinical Journal of the American Society of Nephrology, 2012; 7:1-8. Link
  39. T. Blattner, S. Yang, Performance study on CUDA GPUs for parallelizing the local ensemble transformed Kalman filter algorithm, Concurrency and Computation: Practice and Experience, 2012; 24(2):167-77, John Wiley & Sons. Link PDF
  40. S. Yang, MK Gobbert, The optimal relaxation parameter for the SOR method applied to the Poisson equation in any space dimensions, Applied Mathematics Letters 22 (3), 325-331 Link PDF
  41. S. Yang, T. Huang, A note on estimates for the spectral radius of a nonnegative matrix, Electron. J. Linear Algebra. v13, 352-358 Link

Patent

  1. (published) P.Hu, C. Mackenzie, S. Yang, H. Chen, Method and Apparatus for Predicting a Need for a Blood Transfusion, US Patent Appl. No. 20160183885; Pub.No.: WO/2015/023708 A1. UM Ventures
  2. (published) C. Mackenzie, S. Yang, P. Hu, E. Garofalo, Automated Surgeon Performance Evaluation, Pub.No:WO/2017/031175

Conference paper

  1. S. Yang, K. Kalpakis, A. Biem, Spatio-temporal Coupled Bayesian Robust Principal Component Analysis for Road Traffic Event Detection, IEEE Intelligent Transportation Systems (ITSC2013), Oct.6-9, 2013, Hague, Netherland. Abs PDF
  2. S. Chen, S. Yang, K. Kalpakis, Chein-I Chang, Low-rank decomposition-based anomaly detection, SPIE 2013, Baltimore.
  3. S. Yang, K. Kalpakis, Colin F. Mackenzie, Lynn G Stansbury, Deborah M. Stein, Thomas M. Scalea, P. F. Hu, Online Recovery of Missing Values in Vital Signs Data Streams using Low-rank Matrix Completion, 11th International Conference on Machine Learning and Applications ICMLA 2012,pp.281-287, Dec.12-15, Boca Raton, FL Abs PDF
  4. S. Yang, K. Kalpakis, Alain Biem, An Adaptive Observation Site Selection Strategy for Road Traffic Data Assimilation, Fifth ACM SIGSPATIAL International Workshop on Computational Transportation Science, Nov. 6, 2012, Redondo Beach, CA Abs PDF Slides
  5. K. Kalpakis, S. Yang, Peter Hu, C. F. Mackenzie, L. Stansbury, D.M. Stein, T.M. Scalea, Outcome Prediction for Patients with Severe Traumatic Brain Injury Using Permutation Entropy Analysis of Electronic Vital Signs Data, Machine Learning and Data Mining in Pattern Recognition, 415-426 (Nominated Best Paper.) Link Abs PDF Slides
  6. MK Gobbert, S. Yang, Numerical demonstration of finite element convergence for Lagrange elements in COMSOL Multiphysics, In: Vineet Dravid, editor, Proceedings of the COMSOL Conference 2008, Boston, MA. Link PDF

Abstract

  1. S. Yang, D.M. Stein, S. Galvagno, S. Shackelford, C. Miller, C.F. Mackenzie, S. Wade, T. Grissom, N. Roux, P.F. Hu, Prototype Design of Real Time Vital Signs Monitor System for Critical Care Air Transport Team(CCATT), Millitary Health System Research Symposium (MHSRS) 2016, Kissimmee, FL, Aug. 15-18, 2016. Abs
  2. S. Yang, P.F. Hu, K. Kalpakis, C. Miller, H.C. Li, Y. Li, D.M. Stein, Intracranial Pressure (ICP) Estimation Through Fast Similarity Search, 16th Int’l Symposium on Intracranial Pressure and Neuromonitoring, Boston, MA, Jun.28-Jul.2, 2016.
  3. N. Parimi, S. Yang, P.F. Hu, H.C. Li, C.F. Mackenzie, R. A. Kozar, M.J. Fontaine, C. Miller, T.M. Scalea, D.M. Stein, Emergency Blood Transfusion Following Trauma - Selecting the Right Patient, 39th Annual Conference on Shock, Austin, TX, Jun.11-14, 2016.
  4. S. Yang, H.C Li, R. Kozar, C.F. Mackenzie, C. Miller, L.G. Stansbury, D.M. Stein, T.M. Scalea, P.F. Hu, New Pre-hospital Vital Signs Triage Threshold for Better Prediction of Emergency Blood Transfusion for Geriatric Trauma Patient, 39th Annual Conference on Shock, Austin, TX, Jun.11-14, 2016.
  5. M. J. Bradley, B. Bonds, L. Chang, S. Yang, P. Hu, H.C. Li, M.L. Brenner, T.M. Scalea, D.M. Stein, Open Chest Cardiac Massage Offers No Benefit Over Closed Chest Compressions in Patients with Trauma Cardiac Arrest, 29th EAST Annual Scientific Assembly, Jan. 12-16, 2016, San Antonio, Texas.
  6. P. Hu, S. Shackelford, S. Yang, H.C. Li, D. M. Stein, T.M. Scalea, C.F. Mackenzie, Do Multiple Vital Sign Sensors Improve the Prediction of Emergency Blood Transfusion in Adult Trauma Patients? Millitary Health System Research Symposium (MHSRS) 2015, Aug.17-20, Ft. Lauderdale, FL.
  7. P. Hu, S. Yang, F. Yang, H.C. Li, G. Hagegeorge, L. Hartsky, C. Miller, B. Bonds, C.F. Mackenzie, Big Data Challenge: How Much Redundance is Required in Real-time Trauma Patient Vital Signs Waveform Collecting System? Millitary Health System Research Symposium (MHSRS) 2015, Aug.17-20, Ft. Lauderdale, FL.
  8. D.M. Stein, P. Hu, S. Yang, et. al, An Early Decision Model Predicts the Need for Uncross Matched Blood (UnXRBC) and Massive Transfusion (MT) Following Trauma, the 74th Annual Meeting of AAST and Clinical Congress of Acute Care Surgery, Las Vegas, NV, Sep.9-12, 2015.
  9. K. Colton, S. Yang, P. Hu, T. M. Scalea, D. M. Stein, Simplifying the calculation of optimal cerebral perfusion pressure without continuous waveforms, Society of Critical Care Congress (SCCM) 2015, Phonenix, Arizona, Jan.17-21, 2015.
  10. C. Mackenzie, G. Cheng, A. Ananzada, H.H. Chen, S. Yang, R. Fang, S. Galvagno, P. Hu, Are hemoglobin oximetry, vital signs and laboratory values able to predict emergency transfusion? Society of Critical Care Congress (SCCM) 2015, Phonenix, Arizona, Jan.17-21, 2015.
  11. K. Colton, S. Yang, P. Hu, H.H. Chen, T.M. Scalea, D. M. Stein, Hemodynamic changes after decompressive craniectomy for intracranial hypertension, Society of Critical Care Congress (SCCM) 2015, Phonenix, Arizona, Jan.17-21, 2015.
  12. S. Yang, P. Hu, Y. Wang, A. Anazado, C. Miller, R. Fang, S. Shackelford, C. Mackenzie, Design of Vendor-neutral Platform for Fast Prototype Model Verification and Deployment, AMIA Annual Symposium 2014, Nov. 14-18, D.C.
  13. P. Hu, R. Ramakrishnan, S. Yang, A. Anazodo, C. Imle, L. Hartsky, C. Miller, S. Shackelford, S. Galvagno, J.D.O., C. Mackenzie, Do multiple measurements of field vital signs enhance prediction of emergency transfusion and interventions?, ASA (Anesthesiology) 2014, New Orleans, LA, Oct.11-15. Link
  14. B. Bonds, P. Hu, Y. Li, S. Yang, K. Colton, T. Grisson, R. Fang, D. Stein, Predicive Value of Hyperthermia and Intracranial Hypertension on Neurological Outcomes in Patients with Moderate to Severe Traumatic Brain Injury, International Brain Injury Association(IBIA), San Francisco, Mar. 19-22, 2014.
  15. K. Colton, S. Yang, P. Hu, H. Chen, L. Stansbury, T.M. Scalea, D.M. Stein, Intracranial Pressure Response After Pharmacologic Treatment of Intracranial Hypertension. 27th Eastern Association for the Surgery of Trauma (EAST) Annual Scientific Assembly, Jan. 14-18, 2014.
  16. K. Colton, S. Yang, P. Hu, L. Stansbury, H. H. Chen, Thomas M. Scalea, Deborah Stein, Responsiveness to Therapy for Increased Intracranial Pressure in Traumatic Brain Injury is Associated with Neurological Outcome, J. of Neurotrauma, 30 (15), A123-A124. Link
  17. H. H. Chen, S. Yang, P. Hu, L. G. Stansbury, Catriona Miller, Deborah M. Stein, T. M. Scalea, Logistic Regression Modeling as an Analytic Platform to Provide Valid Individualized Prognostic Information from Continuous Realtime Monitoring Data in the Neuro-trauma Critical Care Unit, J. of Neurotrauma, 30 (15), A126-A126. Link
  18. R. North, P.F.Hu, S. Yang, K. Frank, C.F. Mackenzie, Real-world Respiratory Rate (RR) Signal Processing During Trauma Patient Resuscitation. AMIA 2013, D.C. Link
  19. P. F. Hu, Colin F. Mackenzie, L. G. Stansbury, S. Yang, X. Zhu, JR Hess, & ONPOINT Group, Gender- and age-adjusted Shock Index predictions of emergent blood use. Military Health System Research Symposium (MHSRS)/ATACCC Aug 13-16 2012
  20. P. Hu, M. Zuckerman, W Fink, S. Yang, J. Fink, Design and Development of a Patient Safety Website for Tracking Chronic Kidney Disease Patients, American Telemedicine Association, 16th Annual International Meeting & Exposition, May 1-3, 2012, Tampa, Florida
  21. K. Kalpakis, S. Yang, Y. Yesha, Near Real-time Data Assimilation for the HYSPLIT Aerosol Dispersion Model, AGU Fall Meeting Abstracts Link

Review

I served as a reviewer for the following journals/conferences:

  1. IEEE Access
  2. Journal of Biomedical Informatics
  3. Military Medicine
  4. Contemporary Clinical Trial Communications (Elsevier)
  5. Entropy, MDPI
  6. Sensors, MDPI
  7. International Journal of Data Science and Analytics
  8. International Conference on Intelligent Computing (ICIC2016)
  9. Statistical Methods in Medical Research
  10. Neurocomputing (Elsevier)
  11. Applied Sciences, MDPI
  12. Healthcare, MDPI
  13. Society for Academic Emergency Medicine Annual Meeting 2016
  14. IEEE BigdataService 2016
  15. IEEE Trans. on Vehicular Technology
  16. AMIA (American Medical Informatics Association) 2014,2015,2016 Annual Symposium
  17. Computers in Biology and Medicine
  18. Currency and Computation

Selected presentations

  1. Learning from Clinical Data 150th Method and Stat Meeting of Patient Safety Research Group, UMB, Aug. 12, 2014. Slides
  2. A short talk on machine learning: on the Method and Stat Meeting of Patient Safety Research Group, UMB, Aug. 5, 2014. Slides
  3. A short talk on variable importance: on the Method and Stat Meeting of Patient Safety Research Group, UMB, Jul. 29, 2014. Slides
  4. Massive Clinical Data Analyzing: How Clinical Research Meets the Big Data. Univ. of Maryland School of Medicine, Department of Anesthesiology, Jan. 30, 2014. Slides
  5. Road Traffic Forecast: On Model Calibration and Solving. UMBC, Mar. 27, 2012. Slides
  6. Graphical Model and Partical Filtering. UMBC. Apr. 11, 2011. Slides